Rémi Zallot

Rémi Zallot

Senior Lecturer (Associate Professor) in Biochemistry at Manchester Metropolitan University

Publications

You can also find my articles on my Google Scholar profile.

Journal Articles

  1. Characterization of putatively lytic bacteriophages able to infect Xanthomonas citri subsp. citri and identification of novel putative exopolysaccharide depolymerases Caio Felipe Cavicchia Zamunér, Roobinidevi Ragupathy, Mateus S. Terceti, Rémi Zallot, James Redfern, Jeffrey B. Jones, Franklin Behlau, Henrique Ferreira, Mark C. Enright. Microbial Genomics, 12(9), 001821, 2026. · doi:10.1099/mgen.0.001821
  2. A cloaked glutamate decarboxylase sustains the GABA shunt in Mycobacterium tuberculosis Hai Minh Thai, Debbie M. Hunt, Yugen Miyahara, Manisha Priya, Htin L. Aung, Rémi Zallot, Luiz Pedro S. de Carvalho. Proceedings of the National Academy of Sciences, 123(34), e2619778123, 2026. · doi:10.1073/pnas.2619778123
  3. Cryptic enzymatic assembly of peptides armed with β-lactone warheads Guangcai Xu, Daniele Torri, Sebastian Cuesta-Hoyos, Deepanjan Panda, Luke R. L. Yates, Rémi Zallot, Kehan Bian, Dongxu Jia, Andreea I. Iorgu, Colin Levy, Sarah A. Shepherd, Jason Micklefield. Nature chemical biology, 2024. · doi:10.1038/s41589-024-01657-7
  4. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages Valérie de Crécy-Lagard, Geoffrey Hutinet, José D. D. Cediel-Becerra, Yifeng Yuan, Rémi Zallot, Marc G. Chevrette, R. M. Madhushi N. Ratnayake, Marshall Jaroch, Samia Quaiyum, Steven Bruner. Microbiology and Molecular Biology Reviews, 2024. · doi:10.1128/mmbr.00199-23
  5. Bioinformatics-facilitated identification of novel bacterial sulfoglycosidases that hydrolyze 6-Sulfo-N-acetylglucosamine Mochen Dong, Zhuoyun Chen, Yuan He, Rémi Zallot, Yi Jin. ACS Bio & Med Chem Au, 2024. · doi:10.1021/acsbiomedchemau.4c00088
  6. Mechanistic and structural insights into the specificity and biological functions of bacterial sulfoglycosidases Zhen Zhang, Mochen Dong, Rémi Zallot, George Michael Blackburn, Nini Wang, Chengjian Wang, Long Chen, Patrick Baumann, Zuyan Wu, Zhongfu Wang, Haiming Fan, Christian Roth, Yi Jin, Yuan He. ACS Catalysis, 2023. · doi:10.1021/acscatal.2c05405
  7. EFI-EST, EFI-GNT, and EFI-CGFP: enzyme function initiative (EFI) web resource for genomic enzymology tools Nils Oberg, Rémi Zallot, John A. Gerlt. Journal of molecular biology, 2023. · doi:10.1016/j.jmb.2023.168018
  8. Epoxyqueuosine reductase QueH in the biosynthetic pathway to tRNA queuosine is a unique metalloenzyme Qiang Li, Rémi Zallot, Brian S. MacTavish, Alvaro Montoya, Daniel J. Payan, You Hu, John A. Gerlt, Alexander Angerhofer, Valérie de Crécy-Lagard, Steven D. Bruner. Biochemistry, 2021. · doi:10.1021/acs.biochem.1c00164
  9. Discovery of new enzymatic functions and metabolic pathways using genomic enzymology web tools Rémi Zallot, Nils Oberg, John A. Gerlt. Current opinion in biotechnology, 2021. · doi:10.1016/j.copbio.2020.12.004
  10. The EFI web resource for genomic enzymology tools: leveraging protein, genome, and metagenome databases to discover novel enzymes and metabolic pathways Rémi Zallot, Nils Oberg, John A. Gerlt. Biochemistry, 2019. · doi:10.1021/acs.biochem.9b00735
  11. Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens Yifeng Yuan, Rémi Zallot, Tyler L. Grove, Daniel J. Payan, Isabelle Martin-Verstraete, Sara Šepić, Seetharamsingh Balamkundu, Ramesh Neelakandan, Vinod K. Gadi, Chuan-Fa Liu, Manal A. Swairjo, Peter C. Dedon, Steven C. Almo, John A. Gerlt, Valérie de Crécy-Lagard. Proceedings of the National Academy of Sciences, 2019. · doi:10.1073/pnas.1909604116
  12. Gene Graphics: a genomic neighborhood data visualization web application Katherine J. Harrison, Valérie de Crécy-Lagard, Rémi Zallot. Bioinformatics, 2018. · doi:10.1093/bioinformatics/btx793
  13. Functional assignment of multiple catabolic pathways for D-apiose Michael S. Carter, Xinshuai Zhang, Hua Huang, Jason T. Bouvier, Brian San Francisco, Matthew W. Vetting, Nawar Al-Obaidi, Jeffrey B. Bonanno, Agnidipta Ghosh, Rémi Zallot, Harvey M. Andersen, Steven C. Almo, John A. Gerlt. Nature chemical biology, 2018. · doi:10.1038/s41589-018-0067-7
  14. ‘Democratized’ genomic enzymology web tools for functional assignment Rémi Zallot, Nils O. Oberg, John A. Gerlt. Current opinion in chemical biology, 2018. · doi:10.1016/j.cbpa.2018.09.009
  15. The Escherichia coli COG1738 member YhhQ is involved in 7-cyanodeazaguanine (preQ0) transport Rémi Zallot, Yifeng Yuan, Valérie de Crécy-Lagard. Biomolecules, 2017. · doi:10.3390/biom7010012
  16. Identification of a novel epoxyqueuosine reductase family by comparative genomics Rémi Zallot, Robert Ross, Wei-Hung Chen, Steven D. Bruner, Patrick A. Limbach, Valérie de Crécy-Lagard. ACS chemical biology, 2017. · doi:10.1021/acschembio.6b01100
  17. Systematic identification and analysis of frequent gene fusion events in metabolic pathways Christopher S. Henry, Claudia Lerma-Ortiz, Svetlana Y. Gerdes, Jeffrey D. Mullen, Ric Colasanti, Aleksey Zhukov, Océane Frelin, Jennifer J. Thiaville, Rémi Zallot, Thomas D. Niehaus, Ghulam Hasnain, Neal Conrad, Andrew D. Hanson, Valérie de Crécy-Lagard. BMC genomics, 2016. · doi:10.1186/s12864-016-2782-3
  18. Functional annotations of paralogs: a blessing and a curse Rémi Zallot, Katherine Harrison, Bryan Kolaczkowski, Valérie de Crécy-Lagard. Life, 2016. · doi:10.3390/life6030039
  19. Bacterial and plant HAD enzymes catalyse a missing phosphatase step in thiamin diphosphate biosynthesis Ghulam Hasnain, Sanja Roje, Na Sa, Rémi Zallot, Michael J. Ziemak, Valérie de Crécy-Lagard, Jesse F. Gregory, Andrew D. Hanson. Biochemical Journal, 2016. · doi:10.1042/bj20150805
  20. Arabidopsis TH2 encodes the orphan enzyme thiamin monophosphate phosphatase Manaki Mimura, Rémi Zallot, Thomas D. Niehaus, Ghulam Hasnain, Satinder K. Gidda, Thuy N.D. Nguyen, Erin M. Anderson, Robert T. Mullen, Greg Brown, Alexander F. Yakunin, Valérie de Crécy-Lagard, Jesse F. Gregory, Donald R. McCarty, Andrew D. Hanson. The Plant Cell, 2016. · doi:10.1105/tpc.16.00600
  21. A family of metal-dependent phosphatases implicated in metabolite damage-control Lili Huang, Anna Khusnutdinova, Boguslaw Nocek, Greg Brown, Xiaohui Xu, Hong Cui, Pierre Petit, Robert Flick, Rémi Zallot, Kelly Balmant, Michael J. Ziemak, John Shanklin, Valérie de Crécy-Lagard, Oliver Fiehn, Jesse F. Gregory, Andrzej Joachimiak, Alexei Savchenko, Alexander F. Yakunin, Andrew D. Hanson. Nature Chemical Biology, 2016. · doi:10.1038/nchembio.2108
  22. Functional diversity of haloacid dehalogenase superfamily phosphatases from Saccharomyces cerevisiae: biochemical, structural, and evolutionary insights Ekaterina Kuznetsova, Boguslaw Nocek, Greg Brown, Kira S. Makarova, Robert Flick, Yuri I. Wolf, Anna Khusnutdinova, Elena Evdokimova, Ke Jin, Kemin Tan, Andrew D. Hanson, Ghulam Hasnain, Rémi Zallot, Valérie de Crécy-Lagard, Mohan Babu, Alexei Savchenko, Andrzej Joachimiak, Aled M. Edwards, Eugene V. Koonin, Alexander F. Yakunin. Journal of Biological Chemistry, 2015. · doi:10.1074/jbc.m115.657916
  23. Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine Rémi Zallot, Mohammad Yazdani, Aymeric Goyer, Michael J. Ziemak, Jiahn-Chou Guan, Donald R. McCarty, Valérie de Crécy-Lagard, Svetlana Gerdes, Timothy J. Garrett, Jordi Benach, John F. Hunt, David K. Shintani, Andrew D. Hanson. Biochemical Journal, 2014. · doi:10.1042/bj20140522
  24. Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family Rémi Zallot, Céline Brochier-Armanet, Kirk W. Gaston, Farhad Forouhar, Patrick A. Limbach, John F. Hunt, Valérie de Crécy-Lagard. ACS chemical biology, 2014. · doi:10.1021/cb500278k
  25. High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource Samuel M. D. Seaver, Svetlana Gerdes, Océane Frelin, Claudia Lerma-Ortiz, Louis M. T. Bradbury, Rémi Zallot, Ghulam Hasnain, Thomas D. Niehaus, Basma El Yacoubi, Shiran Pasternak, Robert Olson, Gordon Pusch, Ross Overbeek, Rick Stevens, Valérie de Crécy-Lagard, Doreen Ware, Andrew D. Hanson, Christopher S. Henry. Proceedings of the National Academy of Sciences, 2014. · doi:10.1073/pnas.1401329111
  26. Identification of the thiamin salvage enzyme thiazole kinase in Arabidopsis and maize Mohammad Yazdani, Rémi Zallot, Meral Tunc-Ozdemir, Valérie de Crécy-Lagard, David K. Shintani, Andrew D. Hanson. Phytochemistry, 2013. · doi:10.1016/j.phytochem.2013.05.017
  27. Identification of mitochondrial coenzyme a transporters from maize and Arabidopsis Rémi Zallot, Gennaro Agrimi, Claudia Lerma-Ortiz, Howard J. Teresinski, Océane Frelin, Kenneth W. Ellens, Alessandra Castegna, Annamaria Russo, Valérie de Crécy-Lagard, Robert T. Mullen, Ferdinando Palmieri, Andrew D. Hanson. Plant physiology, 2013. · doi:10.1104/pp.113.218081
  28. Acyl-lipid metabolism Yonghua Li-Beisson, Basil Shorrosh, Fred Beisson, Mats X. Andersson, Vincent Arondel, Philip D. Bates, Sébastien Baud, David Bird, Allan DeBono, Timothy P. Durrett, Rochus B. Franke, Ian A. Graham, Kenta Katayama, Amélie A. Kelly, Tony Larson, Jonathan E. Markham, Martine Miquel, Isabel Molina, Ikuo Nishida, Owen Rowland, Lacey Samuels, Katherine M. Schmid, Hajime Wada, Ruth Welti, Changcheng Xu, Rémi Zallot, John Ohlrogge. The Arabidopsis book/American Society of Plant Biologists, 2013. · doi:10.1199/tab.0161
  29. Identification et caractérisation d'une lipase exprimée pendant l'hydrolyse des réserves chez Arabidopsis thaliana Rémi Zallot. , 2011. · doi:10.70675/9dd49aa6zb8d6z4630z8574zc0b1ebd25e43
  30. Acyl-lipid metabolism Yonghua Li-Beisson, Basil Shorrosh, Fred Beisson, Mats X. Andersson, Vincent Arondel, Philip D. Bates, Sébastien Baud, David Bird, Allan DeBono, Timothy P. Durrett, Rochus B. Franke, Ian A. Graham, Kenta Katayama, Amélie A. Kelly, Tony Larson, Jonathan E. Markham, Martine Miquel, Isabel Molina, Ikuo Nishida, Owen Rowland, Lacey Samuels, Katherine M. Schmid, Hajime Wada, Ruth Welti, Changcheng Xu, Rémi Zallot, John Ohlrogge. The Arabidopsis book/American Society of Plant Biologists, 2010. · doi:10.1199/tab.0133
  31. Polyphosphoinositides are enriched in plant membrane rafts and form microdomains in the plasma membrane Fabienne Furt, Sabine König, Jean-Jacques Bessoule, Françoise Sargueil, Rémi Zallot, Thomas Stanislas, Elodie Noirot, Jeanine Lherminier, Françoise Simon-Plas, Ingo Heilmann, Sébastien Mongrand. Plant physiology, 2010. · doi:10.1104/pp.109.149823